Core resources
.
Name
Type
URL
Description
AMPSphere database
Full database
Full sqlite3 database containing all individual tables below.
AMP
Individual table
All AMP families and sequences.
GMSC and Metadata
Individual table
All AMP-associated smORF genes, sequences and associated metadata (microbial source, habitats, etc.).
MMseqs database
Search database
Search database for offline or large scale query, can be directly used by the MMseqs software.
HMM profile database
Search database
Search database for offline or large scale query, can be directly used by the HMMER software.
AMP density per species and sample
Individual table
AMP density data accounting only for contigs with taxonomy in the metagenome samples.
Browse our Zenodo page to see all the resources.